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April 29th, 2018

ID Learning Unit: Clinically Important Streptococcal Infections You Need to Know

As mentioned last week, I’m currently attending on the general medical service, a chance to brush up on non-ID clinical skills, and more importantly, to work with smart, energetic house staff and medical students.

Not surprisingly, there’s a wide range of clinical ID on this service, and this year we’ve had a rash of streptococcal infections.

(Get it — “rash” and “strep”? Ha ha ha, medical puns are so funny.)

These cases motivated the following summary of clinically important streptococcal infections. They’re worth reviewing because they are common and can be severe; additionally, streptococcal taxonomy has got to be one of the most complicated, confusing, and ever-changing areas in all of microbiology.

It seems to have always been this way with strep — I remember struggling with the right nomenclature back during ID fellowship, and it hasn’t become easier over time. Some of these bacteria have had many names over the years, all synonymous and used interchangeably in medical conversations and literature without rhyme or reason.

Sorry about that. Maybe we should send a letter of protest to the International Association of Streptococcal Taxonomic Standards, which doesn’t really exist — but if it did, they’d deserve our cranky petition.

Here then, is a “Strep Infections 101” course — the ones you should remember, and why, with perhaps a few fun taxonomic facts thrown in. Fun, at least, to ID geeks like me.

And since I’m neither a microbiologist nor a super-specialist in bacterial infections, apologies ahead of time for any errors.

  1. Invasive beta-hemolytic streptococci:  Named “beta strep” by their characteristic clearing when they grow on blood agar (for some ancient reason called “beta hemolysis”), they are further classified by their Lancefield antigen status, referring to their carbohydrate composition of their cell walls. These include most importantly Strep pyogenes (group A strep, GAS) and Strep agalactiae (group B strep, GBS). The former is the well-known cause of pharyngitis and skin infections — everything from cellulitis to erysipelas to lymphangitis to necrotizing fasciitis (it’s the dreaded “flesh-eating bacteria”). Strep pyogenes can also cause scarlet fever (see rash “joke” above), and is unique among these bacteria in causing rheumatic fever. Strep agalactiae is best known as a pathogen of newborns (and for being difficult to spell) — but with our strategy of giving prophylaxis to pregnant mothers who are colonized with GBS, it’s actually more common now as a cause of invasive disease (bacteremia, sepsis, osteomyelitis) in adults, most of whom have comorbid medical conditions such as diabetes, alcoholism, or liver disease. Three other lettered beta-streps (groups C, F, and G) cause pharyngitis and clinically important invasive infections, but we hardly ever refer to them by their species names — weirdly, just their letter (for example, “beta-hemolytic streptococcus group G”). Therapeutically, a welcome characteristic of all these beta streps is that they remain susceptible to penicillin and most cephalosporins — hooray!
  2. Strep pneumoniae. Once upon a time this would have been listed #1! However, though still one of the leading causes of otitis media, sinusitis, pneumonia, and meningitis, the incidence has dramatically declined due to our two available pneumococcal vaccines. Particularly susceptible hosts include those with defects in humoral immunity or asplenia — myeloma, HIV, certain congenital immunodeficiencies, sickle cell disease, alcoholism. Penicillin susceptibility has gradually declined (though most are still penicillin susceptible), while respiratory fluoroquinolone activity fortunately (and surprisingly) has not, at least here in the USA.
  3. Endocarditis-causing “Strep viridans”:  Normal inhabitants of the mouth, and known primarily as a common cause of endocarditis, the viridans streptococci are actually multiple different species of strep frequently lumped under the pseudotaxonomic name, Strep viridans. Many have alpha (green) hemolysis on blood agar, from which they derive their name (viridis is Latin for green); some have no hemolysis at all. Microbiology purists don’t generally like pseudotaxonomic names, and hence your lab will report something more specific than Strep viridans, e.g. Strep mutans, Strep salivarius, Strep mitis, etc.
  4. Also endocarditis-causing Strep bovis — I mean Strep gallolyticus: I nearly put Strep bovis in the above group since it has also become a pseudotaxonomic name; turns out these bacteria previously identified as Strep bovis are actually multiple different species — Strep gallolyticus, Strep infantarius, probably others. Since I don’t really understand all this, and only have so much time in the day, I was heartened to read the following in a recent review: “The history of the Streptococcus bovis group is complicated and confusing due to conflicting classical distinctions based on imperfectly differentiating phenotypic attributes and due to modern disagreements concerning the optimal molecular methods for identification to the species level.” That’s for sure! Endocarditis with Strep bovis (ok, Strep gallolyticus) is most famously associated with colon cancer — a fact that almost 100% of even apathetic medical students know. The penetrance of this bit of microbiology trivia might even surpass medical students’ knowledge of listeria. Which makes me wonder — why are some random facts so memorable? And will this sticky Strep bovis knowledge persist with the new name?
  5. Abscess-forming streptococci — Strep anginosus, Strep intermedius, and Strep constellatus:  Formerly known simply as Strep milleri (those were the days), these streptococci also turn out to be multiple different species, and are now named after one of the three principal isolates, Strep anginosus — hence the term Strep anginosus group is preferred over Strep milleri. In addition to Strep anginosus, you might also find Strep intermedius or Strep constellatus — all three are common causes of dental, lung, liver, brain, and other abscesses. (These species also may have subspecies, but I’m not going to go there. You’re welcome.) As with the beta streps, they have retained penicillin and cephalosporin susceptibility — ceftriaxone is the drug we most commonly use for treatment.

There are, of course, numerous other streptococcal infections, but these are the most common ones on a general medical service.

Plus, it’s time to watch a big inflatable duck rolling down a highway in Des Moines.

April 22nd, 2018

Some ID Stuff We’re Talking About on Medical Rounds — with Bonus Andy Borowitz Podcast

Sam approaching a “scent detection box.”

As an infectious diseases specialist attending on the general medical service each year, I am the beneficiary of a wonderful knowledge exchange.

The smart house staff and my generalist co-attending teach me the latest about hyperkalemia, anticoagulation, anemia, alcohol withdrawal, acute renal injury, COPD, atrial fibrillation, pancreatitis, asthma, diabetes, and congestive heart failure — to name a few of the non-infectious issues that come up routinely during inpatient care.

For example, I am now quite comfortable saying HFpEF — which, if you haven’t done inpatient medicine in a while, is pronounced “HEF-PEF,” and most certainly did not get mentioned a single time during my residency training.

And what do they get in return? A bunch of infectious diseases snippets, factoids, random comments, and (I hope) clinical pearls, such as the following:

Meanwhile, in other news, there’s this podcast — highly recommended and entertaining!

https://www.facebook.com/andyborowitz/posts/10156754879150681

And note, not a single mention of an antibiotic.

April 16th, 2018

Hepatitis C Positive Organ Donors — Coming Soon to a Transplant Center Near You

There’s one immutable fact in solid organ transplantation — the number of patients awaiting transplant exceeds the number of available organs.

This shortage means that ethical, medically safe strategies to increase the donor pool are always a high priority.

One such strategy would be to allow transplants from people who have chronic hepatitis C.

If the thought of transplanting an HCV-infected organ into an uninfected recipient gives you pause, you’re not alone — the practice is explicitly discouraged in some transplant guidelines.

However, HCV today is an entirely different beast than when these guidelines were crafted. Treatment is now astoundingly safe and effective, with over 95% of patients cured, typically with 8–12 weeks of simple therapy.

Not surprisingly, transplant programs are now studying the safety of conducting transplants from HCV-infected donors into HCV-uninfected recipients, then treating with HCV therapy.

While published data are still relatively sparse, two small studies in renal transplant recipients (here and here, 10 patients each), showed that HCV treatment at the time of transplant or shortly after is safe and effective. None of the 20 patients developed chronic hepatitis C.

Now a third study (led by my colleague Ann Woolley), has just been presented at the annual meeting of the International Society for Heart and Lung Transplantation.

In this trial of lung and heart transplant recipients, 33 patients received organs from donors who were HCV viral load positive; an additional 8 came from donors who were HCV antibody positive but viral load negative. The former group received an abbreviated 4-week course of sofosbuvir-velpatasvir right after transplant; the latter only received treatment if they became viremic (none has to date).

With the caveat that the study is ongoing, thus far the the regimen has been well-tolerated, with no one developing chronic HCV.

Not surprisingly, several other hepatitis C donor protocols are starting, but it’s not rocket science to predict their outcomes. HCV can be effectively treated and cured (or prevented, if you interpret preemptive therapy that way) in transplant recipients, with currently available regimens.

Doing so will greatly increase the pool of available organs. In a tragic silver lining to the horrible opiate epidemic cloud over our country, premature deaths from overdoses may provide life-saving organs to patients in desperate need — organs that previously would have been discarded due to hepatitis C. A paper published today shows that the number of donated organs from overdose deaths has already increased 24-fold since the year 2000 — imagine what this increase would be if organs from people with HCV were permitted.

(Sorry about the silver lining cliché there — but at least I’m in good company!)

Are there remaining research questions with this strategy? Of course — among these include selection of the best regimen, the duration of therapy, management of drug interactions, and cost. Plus, we must recognize that these remain high risk donors who may have other infectious diseases (besides HCV) that will influence transplant outcomes.

But these are answerable questions, with none insurmountable. As noted in this excellent editorial, we’ve long allowed transplants from CMV-positive to CMV-negative patients — and the antiviral regimens for CMV are far less safe and effective than those for HCV.

Can’t you see a policy change coming soon?

April 8th, 2018

Latest DHHS Guidelines for Initial HIV Therapy Now Include 5 Choices — But Really 2 Are Best

On March 28, the Department of Health and Human Services Guidelines issued an update to the HIV treatment guidelines, with a focus on the recent approval of bictegravir/TAF/FTC:

BIC/TAF/FTC is an effective and well-tolerated INSTI-based regimen for initial therapy in adults with HIV, with efficacy that is noninferior to DTG/ABC/3TC and DTG plus TAF/FTC for up to 48 weeks. On the basis of these clinical trial results, the Panel classifies BIC/TAF/FTC as one of the Recommended Initial Regimens for Most Adults with HIV.

Based on this change, there are now five recommended initial regimens for most people:

  1. Bictegravir/TAF/FTC
  2. Dolutegravir/ABC/3TC
  3. Dolutegravir + TAF (or TDF)/FTC
  4. Elvitegravir/cobicistat/TAF (or TDF)/FTC
  5. Raltegravir + TAF (or TDF)/FTC

All are based on an integrase inhibitor and a pair of NRTIs. Four have tenofovir/FTC as the NRTI pair. Three are available as a single tablet, once daily.

But with the important caveat that what follows represents my opinion and not that of these or any other guidelines, one could easily argue that there are really two primary choices here, not five.

And those are dolutegravir + TAF (not TDF)/FTC and, now, bictegravir/TAF/FTC.

Here’s why:

  • Raltegravir and elvitegravir both have a lower resistance barrier than dolutegravir and bictegravir. Virologic failure with elvitegravir and raltegravir may select for integrase resistance, usually along with NRTI resistance. This hasn’t happened yet in any clinical trial of dolutegravir or bictegravir for initial therapy, at least when given with two NRTIs.
  • Elvitegravir requires the pharmacokinetic booster cobicistat. This greatly increases the drug interactions of this option, some of which are highly clinically significant.
  • Raltegravir is two pills. In addition, it cannot be coformulated.
  • The association between abacavir and cardiovascular disease has become stronger with recent research. In addition, abacavir requires pre-treatment HLA-B5701 testing and does not treat hepatitis B. Furthermore, the coformulation of dolutegravir/ABC/3TC is the largest of the single-pill options for HIV therapy.
  • TAF has a better renal and bone safety profile than TDF. There will likely be cost benefits of TDF/FTC over TAF/FTC eventually, but they are not yet realized in the clinic.

As of April 8, 2018 (the day I’m writing this post), the choice between the two remaining options reflects how we and our patients feel about two issues.

If giving one pill rather than two is most important, then go with bictegravir/TAF/FTC.

If accumulated safety and “real world” experience is most important, then go with dolutegravir plus TAF/FTC.

Hey, isn’t HIV treatment simple these days?

April 1st, 2018

News Flash — The World Isn’t Sterile

I am a serious biothreat.

You might have missed this press release from the National Institute of Allergy and Infectious Diseases (NIAID):

Bethesda, MD
April 1, 2018
The National Institute of Allergy and Infectious Diseases, at the National Institutes of Health, invites grant applications which propose research in the following 3 critical world health challenges:
1.  Development of an effective HIV vaccine.
2.  Global eradication of malaria.
3.  Identification of the germs you can find lurking on or inside everyday objects. Priority items for this research include the kitchen drying rack, the shower curtain, and bathtub toys.

Well, not really.

But the inspiration for that (lame) April Fools’ Day joke was this recently published study finding bacteria inside your kid’s rubber duck.

And it’s not just rubber ducks. A prior study found these and other scary bugs in your office coffee maker.

While we’re at it, let’s take a look at your flight’s tray table.

On your kitchen sponge.

Or in the other room, on your TV remote control.

Outside, in the playground sandbox.

And beware your doctor’s necktie and stethoscope. And that white coat? Teeming. I could go on and on.

(In fact, I already did!)

Indeed, if you look hard enough, bacteria can be found literally everywhere — except perhaps inside your hospital’s autoclave.

What’s missing from all these studies, of course, is a correlation between identification of these bugs and any subsequent diseases. It’s not as if kids with rubber ducks are coming down with more infections than kids who don’t have them.

Perhaps a competing bath toy company will fund a clinical outcomes study, but don’t hold your breath. The rubber ducks have quite a stranglehold on this market.

In summary, bacteria on common household, work, and travel items are ubiquitous; furthermore, we lack any clinical data that this is important in any way.

Hence, I wonder — why are these “we found bacteria on [common-item]” studies so common? Even more perplexing, why are they such popular news fodder? The press can’t seem to get enough.

According to its Altmetric score (pictured to the right), the above-mentioned rubber duck study is a bigger news story than the fact that rates of tuberculosis in the USA have reached historic lows.

(Since TB control is one of the few things our crazy U.S. healthcare system does really well, I like to publicize these data whenever possible. You’re welcome.)

And what do we call these studies? Clearly the very category deserves a name:

While there are several excellent proposals, I’m particularly partial to two answers so far — “Quotidiome” and “Ubiquibiota” — and certainly understand the appeal of “Nocarediosis,” though that one might be a bit too obscure for non-ID types.

Any other ideas?

March 25th, 2018

Why Is Some Academic Spam Funnier Than Others?

This invitation made me laugh out loud:

From: International Journal of Poultry and Fisheries Sciences <poultry@symbiosisonline.us>
Date: Friday, March 23, 2018 at 7:03 AM
To: “Sax, Paul Edward,M.D.”
Subject: Accepting Articles for our Inaugural Issue: IJPFS 

Dear Dr. Paul E Sax,

Greetings from International Journal of Poultry and Fisheries Sciences!

We are privileged to introduce International Journal of Poultry and Fisheries Sciences a peer reviewed journal and currently inviting papers for inaugural issue.

We had a glance at your published article “Tenofovir alafenamide versus tenofovir disoproxil fumarate, coformulated with elvitegravir, cobicistat, and emtricitabine, for initial treatment of HIV-1 infection: two randomised, double-blind, phase 3, non-inferiority trials.”.

We found your article very innovative, insightful & interesting; we really value your outstanding Contribution towards Scientific Community and it was really appreciated.

With the theme of ‘Serving Scientific Community for a better Mankind’, to International Journal of Poultry and Fisheries Sciences is publishing articles dealing with all aspects of poultry and fisheries. Being impressed by your quality work, we are contacting you to know if you can associate with us by submitting your upcoming research.

We accept any article (Research Paper, Review Articles, Short Communications, Case Reports, Mini- Review, Opinions, and Letter to Editors etc.) for publication so, we Request you, to provide your manuscript on or before March 29th, 2018.

Note:  If need arises, we will extend the date of submission as per your convenience.

Your diligent work and speedy submission will expedite the release of the inaugural issue of the journal.

International Journal of Poultry and Fisheries Sciences would be highly appreciative of your contribution and cooperation. 

Thank you for your valuable time! Kindly revert to us for your queries.

Best Regards,

Carolyn Sonia

International Journal of Poultry and Fisheries Sciences

Symbiosis Group

1203, Heron Dr

Normal IL 61761

T: +1-872-356-4001

F: +1-309-424-5750

poultry@symbiosisonline.us 

This might be the most absurd single item of academic spam I’ve ever received.

Beats the invite from the Johnson Journal of Aquaculture and Research by a mile.

And surpassed everything on this list from Marty Hirsch, which I can’t resist sharing again:

So congratulations to the “International Journal of Poultry and Fisheries Sciences,” or the “IJPFS,” as it’s commonly known to all — you are the winner!

Which got me wondering — why is some academic spam funnier than others?

March 18th, 2018

Why with Extremely Resistant Infections, It’s Extremely Important to Consult ID

Since the only procedures most of us Infectious Diseases doctors do with any regularity are biopsies of patient medical records, we have to justify our existence in other ways — such as collecting data on how our expertise improves patient outcomes.

There are a bunch of these papers published, with this one being the most widely cited (the title says it all):

Infectious Diseases Specialty Intervention Is Associated With Decreased Mortality and Lower Healthcare Costs  

Here are a few more, hardly a comprehensive list:

Now, a paper just published in Open Forum Infectious Diseases looks at the effect of ID consultation on outcomes in patients hospitalized with multidrug-resistant organisms (MDROs).

The retrospective review spanned nearly 10 years of data and included over 4000 patients. The researchers found that ID consultation was associated with a significant reduction in all-cause mortality for drug-resistant S. aureus, Enterobacteriaceae, and polymicrobial MDRO infections.

For some of these infections, the effect was huge — a 50% decrease in deaths. Patients with resistant gram-negative infections also had a reduction in 30-day readmissions.

Studies like this are critically important to our specialty. They demonstrate the value of Infectious Diseases in ways that go far beyond simply counting “relative value units” (RVUs), a scoring system where we invariably come up short.

Finally, leave it to that bastion of common sense, Consumer Reports, to summarize the results perfectly:

Aside from the hyphen between “infectious-disease” in the subtitle, I couldn’t have said it better myself!

March 11th, 2018

Really Rapid Review — CROI 2018, Boston

The 25th Conference on Retroviruses and Opportunistic Infections (CROI) just wrapped up in warm, sunny Boston.

Everyone in attendance took advantage of the fine March weather to get some much-needed sun, to feel the sand between their toes, to sip a tropical drink, and to hear the latest in HIV research.

Well, the last part was true — CROI clearly remains our best meeting, the only one that brings together so much high quality research from so many disciplines. Clinical, basic, and behavioral researchers all have a place here.

And though the meeting was bookended by a pair of Nor’easters — the one at the start was a whopper, I thought my dog Louie would blow away in the wind — the weather during most of the conference was actually not bad at all.

On to some highlights, a Really Rapid Review®, with apologies ahead of time for the poor organization. As always, feel free to write in the comments section any important studies I might have missed.

The dates of CROI are no longer a tightly kept secret (hooray!), so we already know that next year’s meeting will be in Seattle, March 4-7, 2019.

As for here in Boston, we’re getting ready for our next big storm.

So what did I miss?

March 4th, 2018

Winner of ID Cartoon Caption Contest #3, and Here’s #4 Just in Time for CROI

One of the challenging aspects of writing this blog is that there is so much interesting material in the ID/HIV world that sometimes I forget to cover critical items.

Example: the winner of the most recent ID Cartoon Caption Contest, which I’m embarrassed to admit, has been awaiting its announcement since late 2016.

The winner:

“He was ready to go 6 days ago but I can’t find ‘discharge’ on the menu.”

It’s a great caption, trouncing the very strong competition of 3 other finalists by garnering 62% of the vote.

But I confess we here at NEJM Journal Watch were torn between this one and “Have you tried switching him off and back on again?,” which we thought would finish stronger than its 13% of the total vote.

Concerned, we asked our crack team of cybersecurity experts to investigate further, and we’re proud to announce there was no Russian meddling in the voting process. Hence, the winner is clear.

So congratulations to Steve V., who submitted the top caption! As I’m sure he’s aware, he’s the winner of a lifetime free subscription to this blog, good in all 50 states and US Territories. If Steve V. is from another country, he can continue to access the blog provided he has a valid yellow fever vaccination certificate.

Now, onto the next contest. Some of us in the ID/HIV world will be coming to Boston for CROI this week, but fortunately my skilled collaborator Anne Sax not only isn’t attending CROI, she also has no idea what “CROI” even is.

Working together (my idea, 100% her drawing), we’ve come up with the doctor-patient encounter displayed below, perhaps inspired by last week’s Nor’easter.

As before, write your proposed caption in the comments section, or pop it on my Twitter feed — or, if you’re feeling shy, email it to me at id.caption@yahoo.com.

Good luck!

 

February 25th, 2018

Is Self-Administered Postexposure Prophylaxis Another Viable Option for HIV Prevention?

Most of the pivotal trials of pre-exposure prophylaxis (PrEP) have used daily therapy.

The lone exception is the IPERGAY study. Men at high risk for acquiring HIV took two tablets of tenofovir DF/emtricitabine (TDF/FTC, Truvada) before sex, and one tablet the next 2 days.

The strategy was highly effective in preventing HIV acquisition, and intermittent PrEP is endorsed as an option in France, where the study was conducted.

(About that name — it stands for Intervention Préventive de l’Exposition aux Risques avec et pour les Gays. I have it on good word from the lead investigator that they can say it in French without smiling.)

The main concern some have raised about the IPERGAY results is that participants had relatively frequent exposures (a median of 4/month), enough so that sufficient tissue levels of TDF/FTC could be maintained.

But what about even less frequent high risk exposures, say a few of times a year? Daily PrEP for these patients seems like overkill, and intermittent PrEP may not work. Might they benefit from a different prevention strategy?

A group in Toronto just published a novel approach to these patients — instead of giving them PrEP, they are recommending on-demand postexposure prophylaxis (PEP).

(In the paper, they call it “PEP-in-pocket,” or “PIP,” but I don’t think we can tolerate another one of these single syllable abbreviations in HIV prevention that begins with “P.”)

From 2013–2017, two clinical sites identified relatively low-risk individuals from those who were initially referred for PrEP.

The preventive strategy consisted of prescribing a 28-day supply of TDF/FTC plus dolutegravir, with instructions to start it as soon as possible if the patient had what they deemed to be an exposure that might transmit HIV.

Thirty such people were identified. In the follow-up period, 4 of the 30 initiated PEP on their own, all doing so within 10 hours of the exposure. Each reported good adherence to their treatment, and were closely followed-up.

All who started preventive medications were seen in clinic within a week for clinical evaluation and blood work. There were no HIV seroconversions in 21.8 person-years of follow-up.

Of course, the small size of the study, and its retrospective, non-comparative design hardly are sufficient to incorporate this strategy into guidelines.

Nonetheless, there are several advantages to this on-demand PEP strategy. These include avoiding daily exposure to medications, lower drug costs, reducing emergency room visits, and still providing some preventive intervention, just in case. Individuals who start on-demand PEP multiple times can be transitioned to PrEP, which is what happened to 4 of the patients in this study.

I look forward to hearing more about this approach — and I’d be saying that even if the senior author weren’t a graduate of our ID fellowship program!

(Nice work, Isaac.)

HIV Information: Author Paul Sax, M.D.

Paul E. Sax, MD

Contributing Editor

NEJM Journal Watch
Infectious Diseases

Biography | Disclosures | Summaries

Learn more about HIV and ID Observations.